Welcome to the documentation for ExonViz

ExonViz is a tool to draw transcripts, to scale. You can try the online version on exonviz.rnatherapy.nl!

Check out the Introduction section for further information, including how to install the project.

Note

This project is under active development. The ExonViz documentation is hosted on Read the Docs.

Contents

• Introduction
• How it works
• Settings
  • scale
  • height
  • width
  • noncoding
  • gap
  • color
  • exonnumber
  • firstexon and lastexon
  • variantcolors
  • –dump-exons and –dump-variants
  • –exon-tsv and –variant-tsv
• Usage
  • Installation
  • Default usage
  • Command line
  • Website
• Examples
  • SDHD
  • NF1
  • Schematic representation of DMD
  • DM20 and PLP1
  • NDUFAF6 cryptic exon
  • CYLD
    • How to create the figure
    • Gather the variants
    • Export the variants
    • Update the variants
    • Draw the figure with ExonViz
• Disclaimer
• API
  • exonviz.Exon
    • Exon
      • Exon.__init__()
  • exonviz.Coding
    • Coding
      • Coding.__init__()
  • exonviz.Variant
    • Variant
      • Variant.__init__()
  • exonviz.draw_exons
    • draw_exons()
• Changelog
  • v0.2.18
  • v0.2.17
  • v0.2.16
  • v0.2.15
  • v0.2.14
  • v0.2.13
  • v0.2.12
  • v0.2.11
  • v0.2.10
  • v0.2.9
  • v0.2.8
  • v0.2.7
  • v0.2.6
  • v0.2.5
  • v0.2.4
  • v0.2.3
  • v0.2.2
  • v0.2.0
  • v0.1.4
  • v0.1.3
    • Breaking changes
  • v0.1.2
  • v0.1.1
  • v0.1.0
  • v0.0.1